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Head of the PhD study programme:

dr hab. Piotr Rozpądek, Prof. UJ
phone: +48 12 664 6108
e-mail: piotr.rozpadek@uj.edu.pl

PhD Student Administration Office:

mgr Magdalena Pisarczyk
phone: +48 453 672 171
magdalena.pisarczyk@uj.edu.pl

 

Limits of places
[regular recruitment] 2023/24:

1st round (June/July):

MCB: 1
JCET: 2
Solaris: 2

2nd round (September):

MCB: 3
JCET: 0
Solaris: 1

3rd round (October/November):

MCB: 2
JCET: 0
Solaris: 0

Admission:

Admission rules
Admission rules [PL version]
Required documents

Required documents [PL version]
Schedule

Apply via: Online Application System

Past calls:

List of past calls

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>>PhD study programme in Biomedical Sciences<< v. 22/23  [eight-terms]
>>PhD study programme in Biomedical Sciences << v. 22/23 [six-terms]

List of potential PhD advisors [MCB]

PhD Programme in Biomedical Sciences is a programme at the Doctoral School of Exact and Natural Sciences the Jagiellonian University in Krakow with a strong inter-disciplinary, international inter-sectoral research and training dimension.

We will recruit early stage researchers (ESRs) in an open call, targeting the most talented and motivated ESRs in the fields of Biological and Medical Sciences. The recruitment process will adhere to the guidelines set in the code of conduct for the recruitment of researchers and the European charter for researchers, ensuring transparency of the recruitment process based on the merit and skills of applicants. The recruitment process will not discriminate applicants based on their personal features.
Training will be focused on the interest and expertise of researchers working at the Malopolska Centre of Biotechnology (MCB), Jagiellonian Centre for Experimental Therapeutics (JCET) and National Synchrotron Radiation Centre (SOLARIS).
The program covers various areas of biology:

  • synthetic,
  • structural,
  • molecular,
  • cellular,
  • developmental

and utilizes plants, viruses, bacteria, invertebrates and vertebrates.
The program is also linked to interdisciplinary studies in endothelial biomedicine. 

Our Students offered a place in our PhD programme will obtain a full scholarship funded by the Polish government regardless of nationality.
The applicants are free to choose the research topic and supervisors from the focus areas based on their personal interests and qualifications. We encourage our students to get involved in the broad range of scientific activities of MCB, JCET and Solaris research groups. It is also an excellent opportunity to learn to think across disciplines and build up initial collaborations and cross-disciplinary skill sets.
The programme is run in English, either in a six-semester or in an eight-semester system.
During their studies, our students are expected to attend training courses in transferable and general research skills, participate in the students' and outreach activities, present their work regularly and attend seminars.

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J1. Metabolic reprogramming in age-dependent endothelial dysfunction and vascular stiffness; novel mechanism of inflamm-ageing (prof. dr hab. Stefan Chłopicki)

Supervisor: dr hab. Stefan Chłopicki

Jagiellonian Centre for Experimental Therapeutics


Chronic, sterile, low-grade inflammation observed in older organism that have been recently named “inflamm-ageing”, results in accelerated development of endothelial dysfunction and large arteries stiffness and can be associated with alterations in vascular mitochondrial function [1, 2]. Systemic endothelial dysfunction and increased stiffness of large arteries, can be measured in clinical conditions, and predict morbidity and mortality of cardiovascular diseases. Accordingly, the improvement in endothelial function and artery stiffness can have therapeutic effects. However, mechanisms involved in inflamm-ageing are not clear. We hypothesize that age-dependent dysfunctional vasculature in inflamm-ageing”, might be linked to vascular metabolic reprogramming that could contribute to vascular inflamm-ageing and subsequently to persistent vascular inflammation, to endothelial dysfunction and arterial stiffness. We aim to characterize metabolic signature of inflamm-ageing in murine models, and in particular to define the mechanisms and importance of metabolic reprogramming in the development of age-dependent endothelial dysfunction in large arteries and in coronary microcirculation, as well as in arterial stiffness. On the methodological level this research project is based on interdisciplinary, state-of-the art methodologies used in our recent studies [3-7] including e.g.; Magnetic Resonance Imaging – MRI to assess endothelial function in vivo in mice, vascular preparations for functional and metabolomic studies, as well as characterization of in vitro phenotype of primary endothelial cells isolated from mice. Targeted and non-targeted metabolomics will be used to define metabolic pathways of dysfunctional endothelium and vascular wall. The research is carried out in the frame of MAESTRO grant and international collaboration.

References:

[1] Liberale L, Montecucco F, Tardif JC, Libby P, & Camici GG (2020). Inflamm-ageing: the role of inflammation in age-dependent cardiovascular disease. Eur Heart J 41, 2974-2982. https://pubmed.ncbi.nlm.nih.gov/32006431/

[2] Tyrrell DJ, Blin MG, Song J, Wood SC, & Goldstein DR (2020). Aging Impairs Mitochondrial Function and Mitophagy and Elevates Interleukin 6 Within the Cerebral Vasculature. J Am Heart Assoc 9, e017820. https://pubmed.ncbi.nlm.nih.gov/33225820/

[3] Bar A, Targosz-Korecka M, Suraj J, Proniewski B, Jasztal A, Marczyk B, et al. Degradation of Glycocalyx and Multiple Manifestations of Endothelial Dysfunction Coincide in the Early Phase of Endothelial Dysfunction Before Atherosclerotic Plaque Development in Apolipoprotein E/Low-Density Lipoprotein Receptor-Deficient Mice. J Am Heart Assoc. 2019;8(6):e011171. https://pubmed.ncbi.nlm.nih.gov/30866689/

[4] Mohaissen T, Proniewski B, Targosz-Korecka M, Bar A, Kij A, Bulat K, et al. Temporal relationship between systemic endothelial dysfunction and alterations in erythrocyte function in a murine model of chronic heart failure. Cardiovasc Res. 2022;118(12):2610-24. https://pubmed.ncbi.nlm.nih.gov/34617995/

[5] Karas A, Bar A, Pandian K, Jasztal A, Kurylowicz Z, Kutryb-Zajac B, et al. Functional deterioration of vascular mitochondrial and glycolytic capacity in the aortic rings of aged mice. Geroscience. 2024. https://pubmed.ncbi.nlm.nih.gov/38418756/

[6] Pospiech E, Bar A, Pisarek-Pacek A, Karas A, Branicki W, Chlopicki S. Epigenetic clock in the aorta and age-related endothelial dysfunction in mice. Geroscience. 2024. https://pubmed.ncbi.nlm.nih.gov/38381284/

[7] Wojnar-Lason K, Tyrankiewicz U, Kij A, Kurpinska A, Kaczara P, Kwiatkowski G, et al. Chronic heart failure induces early defenestration of liver sinusoidal endothelial cells (LSECs) in mice. Acta Physiol. 2024. https://pubmed.ncbi.nlm.nih.gov/38391060/