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Head of the PhD study programme:

Prof. dr hab. Barbara Gil
phone: +48 12 686 2469
barbara.k.gil@uj.edu.pl

PhD Student Administration Office:

mgr Elżbieta Zembala
phone: +48 12 686 2757
elzbieta.zembala@uj.edu.pl

Limit of places
[regular admission]

1st round: 27

Admission:

Admission rules
Required documents
Research topics
Admission schedule
Information for Candidates [in EN]

Documents to be completed in English by a potential academic supervisor:
Academic researcher opinion (or download a generic document from the School website)
Opinion of a research fellow

Past calls:

List of past calls

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>> PhD Programme in Chemistry <<

The individually developed PhD programme in Chemistry enables gaining of broad knowledge which is the basis for future professional careers, competencies necessary for scientific research, as well as the acquisition and development of didactic and professional skills. The curriculum  primarily consists of scientific research carried out as part of the preparation of a doctoral dissertation, in accordance with an individual research plan prepared by the doctoral student in consultation with the supervisor. Similarly, compulsory and optional courses allow for very flexible selection of the education content. 
Compulsory courses dedicated to the PhD programme in Chemistry, developing professional skills include a doctoral seminar, an English language course at C1 level (with option for additional languages at chosen level) and a choice of 3 out of 5 modules: advanced computational and structural techniques; synthetic and analytical; spectroscopic; microscopic; an individually selected course from the offer of the Jagiellonian University and the Faculty Chemistry. PhD student are obliged to attend a seminar at the Doctoral School of the Jagiellonian University, interchangeable with participation in Polish Chemical Society lectures at the Faculty of Chemistry and other seminars offered by Faculty.
Soft skills and general knowledge classes include selected courses (lectures or workshops) to be chosen from a list announced before the beginning of the year. The doctoral student also participates in a workshop course, which enables teaching practices and conducts or co-conducts teaching classes of up to 60 hours per year.

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Characterization of degradation mechanism of CDK4 and CDK6 cell cycle kinases by PROTACs as potential antitumor drugs in cancer therapy / Development of PROTAC probes targeting the CDK4 and CDK6 cell cycle kinases with potential application in oncology (Katarzyna Magiera-Mularz, PhD)

Characterization of degradation mechanism of CDK4 and CDK6 cell cycle kinases by PROTACs as  potential antitumor drugs in cancer therapy / Development of PROTAC probes targeting the CDK4 and CDK6 cell cycle kinases with potential application in oncology (Katarzyna Magiera-Mularz, PhD)
Pursuant to § 7 sections 1 and 3 of Resolution No. 91/IX/2021 of the Senate of the Jagiellonian University of 29 September 2021 on: the rules of recruitment for the Doctoral School of Exact and Natural Sciences at the Jagiellonian University in the academic year 2022/2023, the Director of the Doctoral School of Exact and Natural Sciences announces a competition for two doctoral students with a scholarship financed
from the research project funds as part of the PhD study programme Chemistry.
 
Within the OPUS 22 project entitled “Impact of the CDK4/6-targeted degradation by PROTACs on immune checkpoint signaling in cancer”, a commission set up at the School will conduct recruitment for the PhD study programme Chemistry.
 
The project manager, Katarzyna Magiera-Mularz, PhD offers an opportunity to complete the doctorates in the following area:
  • TITLE 1: Characterization of degradation mechanism of CDK4 and CDK6 cell cycle kinases by PROTACs as  potential antitumor drugs in cancer therapy

  • TITLE 2: Development of PROTAC probes targeting the CDK4 and CDK6 cell cycle kinases with potential application in oncology

After the interviews and the evaluation of the candidates, the Chairman of the committee presents a report to the Director containing a list of candidates recommended for admission to the school as part of the research project.

Project description:

Modern oncology is founded on five treatment pillars: surgery, radiotherapy, chemotherapy, targeted treatments, and immunotherapy. The last two methods only recently joined the repertoire of personalized therapies, with the immunotherapy being the newest addition. Immunotherapy represents one of the major breakthroughs in the treatment of cancer. 
Deregulated cell cycle progression is a hallmark of human cancer, and targeting cyclin-dependent kinases (CDK4/6 proteins) to block cell proliferation has been validated as an effective anti-cancer therapy. CDK4/6 targeting is now under evaluation in a large number of clinical trials, both as single agents as well as in combination with other modalities. Therefore, it is of paramount importance to obtain a better understanding of the mechanisms behind their anti-tumor activity. Our research proposal addresses these timely and important issues of the mechanism of the involvement of the CDK4/6 kinases and PD-1/PD-L1 in tumorigenesis.
The research objective of our project is to characterize the mechanism of degradation of CDK4 and CDK6 cell cycle kinases by PROTACs - small-molecule degrades capable of inducing selective degradation of target proteins. In particular, we are interested in studying how these CDK4/6 PROTACS modulate the tumor immune microenvironment and synergize with the Immune Checkpoint Blockade (ICB)-induced responses.

Candidate’s profile:

  • knowledge of the basics laboratory t knowledge in the field of biochemistry and molecular biology, with particular focus on working with the expression and purification of proteins (TITLE 1) and/or cell cultures (TITLE 2),
  • M.Sc. degree in the field of molecular biology, biochemistry, and/or chemistry, 
  • interest in medicinal and organic chemistry,
  • experience in working with crystallization of the proteins or/and cryo-EM technique (TITLE 1)
  • experience in working with animal models (mouse, rat) and eligibility to participate in the conduct of work on animal models is appreciated (TITLE 2),
  • willingness to take on challenges and pursue independent, creative work,
  • interest in conducting scientific work and commitment to the project,
  • readiness to undertake and support teamwork,
  • at least good knowledge of English (min B2).

Schedule of the competition:

  1. Opening of the competition (means: opening admission in the Online Application System): 16.08.2022
  2. Application submission deadline: (means: closing the Online Application System): 16.09.2022
  3. Entrance exams: 23.09.2022
  4. Announcement of results: 27.09.2022
  5. Enrolment: 28-29.09.2022
  6. Enrollment (reserve list): 30.09.2022
Detailed terms and procedures of admission - tailored to the specific PhD study programme according to the current Recruitment rules for the specific academic year.

Please send your application documents to the project manager, Katarzyna Magiera-Mularz, PhD at: k.magiera@uj.edu.pl and upload them into the Online Application System (irk.uj.edu.pl).
  • the original OAS application printed out from the system, containing a photograph;
  • a photocopy and the original for inspection of: a diploma or other document of graduation of a higher education institution abroad entitling the holder to undertake education in order to obtain the degree of doctor in which it was issued, recognized as equivalent to the relevant Polish master's diploma, and if, by the date of entry, the candidate does not yet hold a master's diploma document, a certificate issued by the higher education institution confirming that the candidate has passed the diploma examination, containing information on the right to take up education in order to obtain the degree of doctor in whose system the institution operates, with the grades given from the diploma examination, from the diploma thesis and on the diploma (for graduates of the second degree studies also a certificate containing these grades from the completed first degree studies);
  • a photocopy and the original for inspection: a diploma supplement;
  • for inspection: identity document (passport in case of foreigners);
  • originals of all other documents provided at the registration stage in the form of a scan.
In the event of exposure to harmful, noxious or hazardous factors, the applicant will, at the time of registration, be referred for a medical examination by an occupational medicine physician. The candidate shall be obliged to deliver, within the time limit set by the programme manager, a medical certificate confirming the absence of contraindications to take up education (applies only to some PhD study programmes).
 
Higher education diplomas awarded abroad should:
  1. bear an apostille clause if the issuing country is covered by the Convention abolishing the requirement legalisation for foreign public documents, done at The Hague on 5 October 1961 (Journal of Laws of 2005, No. 112, item 938) or
  2. be subjected to legalisation, in other cases.
Any document submitted in a language other than Polish or English must be accompanied by a certified translation into Polish or English.

Insurance:

Each doctoral student, including a foreigner, admitted to the doctoral school is obligatorily subject to health insurance if he/she is not covered by such insurance on other grounds (e.g. employment relationship, contract of mandate, business activity, insured as a family member under 26 years of age, as the spouse of an insured person). The health insurance contribution is paid by the Jagiellonian University and is financed from the State budget. In addition, a doctoral student receiving a doctoral scholarship is subject to compulsory retirement and disability insurance and accident insurance.

IMPORTANT:

A person admitted to the doctoral school begin education and acquire doctoral student rights upon taking the oath. The Department of Personal Affairs reports each doctoral student admitted to the School to compulsory health and social insurance at the commencement of education. Until that time foreign candidates are obliged to cover the costs of insurance for the time of travel, treatment, etc. individually.
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